AI maps how a new antibiotic targets gut bacteria

ai-maps-how-a-new-antibiotic-targets-gut-bacteria

For patients with inflammatory bowel disease, antibiotics can be a double-edged sword. The broad-spectrum drugs often prescribed for gut flare-ups can kill helpful microbes alongside harmful ones, sometimes worsening symptoms over time. When fighting gut inflammation, you don’t always want to bring a sledgehammer to a knife fight.

Researchers at MIT’s Computer Science and Artificial Intelligence Laboratory (CSAIL) and McMaster University have identified a new compound that takes a more targeted approach. The molecule, called enterololin, suppresses a group of bacteria linked to Crohn’s disease flare-ups while leaving the rest of the microbiome largely intact. Using a generative AI model, the team mapped how the compound works, a process that usually takes years but was accelerated here to just months.

“This discovery speaks to a central challenge in antibiotic development,” says Jon Stokes, senior author of a new paper on the work,

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MIT researchers develop AI tool to improve flu vaccine strain selection

mit-researchers-develop-ai-tool-to-improve-flu-vaccine-strain-selection

Every year, global health experts are faced with a high-stakes decision: Which influenza strains should go into the next seasonal vaccine? The choice must be made months in advance, long before flu season even begins, and it can often feel like a race against the clock. If the selected strains match those that circulate, the vaccine will likely be highly effective. But if the prediction is off, protection can drop significantly, leading to (potentially preventable) illness and strain on health care systems.

This challenge became even more familiar to scientists in the years during the Covid-19 pandemic. Think back to the time (and time and time again), when new variants emerged just as vaccines were being rolled out. Influenza behaves like a similar, rowdy cousin, mutating constantly and unpredictably. That makes it hard to stay ahead, and therefore harder to design vaccines that remain protective.

To reduce this uncertainty,

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Scientists discover compounds that help cells fight a wide range of viruses

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Researchers at MIT and other institutions have identified compounds that can fight off viral infection by activating a defense pathway inside host cells. These compounds, they believe, could be used as antiviral drugs that work against not just one but any kind of virus.

The researchers identified these compounds, which activate a host cell defense system known as the integrated stress response pathway, in a screen of nearly 400,000 molecules. In tests in human cells, the researchers showed that the compounds help cells fend off infection from RSV, herpes virus, and Zika virus. They also proved effective in combating herpes infection in a mouse model.

The research team now plans to test the compounds against additional viruses, in hopes of developing them for eventual clinical trials.

“We’re very excited about this work, which allows us to harness the stress response of the host cells to arrive at a means to identify and develop broad-spectrum antivirals,” says James Collins, the Termeer Professor of Medical Engineering and Science in MIT’s Institute for Medical Engineering and Science (IMES) and Department of Biological Engineering.

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MIT and Mass General Hospital researchers find disparities in organ allocation

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In 1954, the world’s first successful organ transplant took place at Brigham and Women’s Hospital, in the form of a kidney donated from one twin to the other. At the time, a group of doctors and scientists had correctly theorized that the recipient’s antibodies were unlikely to reject an organ from an identical twin. One Nobel Prize and a few decades later, advancements in immune-suppressing drugs increased the viability of and demand for organ transplants. Today, over 1 million organ transplants have been performed in the United States, more than any other country in the world.

The impressive scale of this achievement was made possible due to advances in organ matching systems: The first computer-based organ matching system was released in 1977. Despite continued innovation in computing, medicine, and matching technology over the years, over 100,000 people in the U.S. are currently on the national transplant waiting list and 13 people die each day waiting for an organ transplant. 

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